Model / method: A BEL pipeline using re-ranking stage through generative models
Problem: Biomedical Entity Linking (BEL) with large language models (LLMs) remains computationally inefficient and challenging to deploy in practical settings.
Method: Propose a set-wise instruction-tuning formulation
Result: Our method demonstrates strong performance on multiple BEL benchmarks, yielding significant improvements in linking accuracy (3%–24%) while reducing inference time compared to the state-of-the-art.